| 2006 CCBA DRAFT | ||||||||
| ROUND ONE | ROUND TWO | ROUND THREE | ||||||
| 1 | BOOTHBAY HRBR (RED) | Felix Hernandez | 25 | REDONDO | Bobby Jenks | 49 | NEW YORK (RED) | Dustin Nippert |
| 2 | ORANGE COUNTY | Robinson Cano | 26 | ORANGE COUNTY | Joe Saunders | 50 | ORANGE COUNTY | Ryan Shealy |
| 3 | BOSTON COLLEGE | Zach Duke | 27 | BOSTON COLLEGE | Hector Carrasco | 51 | BOSTON COLLEGE | Ryan Langerhans |
| 4 | KING COUNTY | Jeremy Hermida | 28 | KING COUNTY | Scott Olsen | 52 | KING COUNTY | Hayden Penn |
| 5 | TALLAHASSEE | Ryan Zimmerman | 29 | EMERALD CITY (TAL) | Anthony Reyes | 53 | TALLAHASSEE | Craig Hansen |
| 6 | MOONLIGHT | Jeff Francoeur | 30 | MOONLIGHT | Ryan Garko | 54 | MOONLIGHT | Adam Wainwright |
| 7 | NEW YORK | Francisco Liriano | 31 | NEW YORK | Matt Murton | 55 | NEW YORK | Andy Sisco |
| 8 | DUNWICH (MIL) | Prince Fielder | 32 | GRAND HAVEN (BHL) | Chuck James | 56 | BOOTHBAY HRBR (MIL) | Tadahito Iguchi |
| 9 | TACOMA | Huston Street | 33 | TACOMA | Conor Jackson | 57 | TACOMA | Yunieski Betancourt |
| 10 | GRAND HAVEN (BHL) | Justin Verlander | 34 | MOONLIGHT (MIL) | Kyle Davies | 58 | BOOTHBAY HARBOR | Clay Hensley |
| 11 | DENVER | Matt Cain | 35 | DENVER | Dan Johnson | 59 | DUNWICH (DEN) | Cory Sullivan |
| 12 | PLAINFIELD | Brian McCann | 36 | LYNNWOOD (PLA) | Mike Jacobs | 60 | PLAINFIELD | Brad Thompson |
| 13 | SEATAC | Andy Marte | 37 | LYNNWOOD | JJ Hardy | 61 | SEATAC | Chris Spurling |
| 14 | BOSTON COLL (LYN) | Chien-Ming Wang | 38 | DUNWICH (STS) | Paul Maholm | 62 | DUNWICH (LYN) | Chris Duffy |
| 15 | BRISTOL | Ryan Doumit | 39 | BRISTOL | Robinson Tejada | 63 | BRISTOL | Melky Cabrera |
| 16 | ORANGE CTY (BUF) | Hanley Ramirez | 40 | BUFFALO | Roberto Hernandez | 64 | BUFFALO | Emil Brown |
| 17 | UNION | Brian N. Anderson | 41 | UNION | Josh Towers | 65 | UNION | Danny Ardoin |
| 18 | WACHUSETT | Jeff Mathis | 42 | GRAND HAVEN | Mark Teahen | 66 | WACHUSETT | Tim Stauffer |
| 19 | GRAND HAVEN | Scott Baker | 43 | WACHUSETT | Justin Huber | 67 | GRAND HAVEN | Jonathan Broxton |
| 20 | NEW YORK (BER) | Brandon McCarthy | 44 | BERLIN | Aaron Small | 68 | BERLIN | Scott Downs |
| 21 | EMERALD CITY (CHA) | Ervin Santana | 45 | GRAND HAVEN (CHA) | Aaron Hill | 69 | GRAND HAVEN (CHA) | Tony Giarratano |
| 22 | DUNWICH | Edwin Encarnacion | 46 | DUNWICH | Ronny Cedeno | 70 | DUNWICH | Josh Johnson |
| 23 | EMERALD CITY | Jonathan Papelbon | 47 | WINTER HILL (ECW) | Dustin McGowan | 71 | TALLAHASSEE (ECW) | Brandon Medders |
| 24 | WINTER HILL | Jason Vargas | 48 | WINTER HILL | Franklin Gutierrez | 72 | WINTER HILL | Chris Ray |
| ROUND FOUR | ROUND FIVE | ROUND SIX | ||||||
| 73 | REDONDO | Gary Majewski | 97 | UNION (RED) | Bubba Crosby | 121 | LYNNWOOD (RED) | Frank Thomas |
| 74 | ORANGE COUNTY | Fernando Rodney | 98 | ORANGE COUNTY | Shin-Soo Choo | 122 | ORANGE COUNTY | Walter Young |
| 75 | BOSTON COLLEGE | Juan Padilla | 99 | BOSTON COLLEGE | Anderson Hernandez | 123 | BOSTON COLLEGE | Chris Woodward |
| 76 | KING COUNTY | Chris Snelling | 100 | KING COUNTY | Tom Gorzelanny | 124 | KING COUNTY | Tyler Walker |
| 77 | EMERALD CITY (TAL) | Blaine Boyer | 101 | TALLAHASSEE | Jeremy Accardo | 125 | TALLAHASSEE | Jeff Fassero |
| 78 | MOONLIGHT | Joey Devine | 102 | MOONLIGHT | Manny Delcarmen | 126 | MOONLIGHT | Jason Grilli |
| 79 | NEW YORK | Ambiorix Burgos | 103 | NEW YORK | Omar Quintanilla | 127 | NEW YORK | Hong-Chi Kuo |
| 80 | BOOTHBAY HARBOR | Will Ohman | 104 | EMERALD CITY (MIL) | Anthony Lerew | 128 | BOOTHBAY HARBOR | Eduardo Perez |
| 81 | TACOMA | Matt Guerrier | 105 | TACOMA | Geoff Geary | 129 | TACOMA | John Grabow |
| 82 | DUNWICH (MIL) | Yorman Bazardo | 106 | BOOTHBAY HARBOR | Damian Jackson | 130 | LYNNWOOD (MIL) | Nate McLouth |
| 83 | LYNNWOOD (DEN) | Edison Volquez | 107 | LYNNWOOD (DEN) | Kelly Shoppach | 131 | CHARLOTTE (DEN) | Jeff Cirillo |
| 84 | PLAINFIELD | Brian Shackleford | 108 | GRAND HAVEN (PLA) | Koyie Hill | 132 | PLAINFIELD | Craig Dingman |
| 85 | PLAINFIELD (LYN) | Jack Taschner | 109 | SEATAC | D J Houlton | 133 | LYNNWOOD | Jeff Baker |
| 86 | SEATAC | Pete Walker | 110 | ORANGE CTY (LYN) | Travis Bowyer | 134 | SEATAC | Pete Orr |
| 87 | BRISTOL | Kelly Johnson | 111 | BRISTOL | Ty Wigginton | 135 | BRISTOL | Rene Rivera |
| 88 | BUFFALO | Oscar Robles | 112 | ORANGE CTY (BUF) | Sean Henn | 136 | CHARLOTTE (BUF) | Sal Fasano |
| 89 | LYNNWOOD (UNI) | Chad Orvella | 113 | LYNNWOOD (UNI) | Dana Eveland | 137 | UNION | Phil Nevin |
| 90 | GRAND HAVEN | Ben Johnson | 114 | WACHUSETT | Lance Cormier | 138 | GRAND HAVEN | Ronny Paulino |
| 91 | WACHUSETT | Ezekiel Astacio | 115 | GRAND HAVEN | Todd Linden | 139 | WACHUSETT | Brad Eldred |
| 92 | GRAND HAVEN (BER) | Rich Hill | 116 | WINTER HILL (BER) | Jeff Fiorentino | 140 | NEW YORK (BER) | Jeremy Affeldt |
| 93 | DUNWICH (CHA) | Ryan Wagner | 117 | DUNWICH (CHA) | Lance Niekro | 141 | DUNWICH (CHA) | Angel Chavez |
| 94 | CHARLOTTE (DUN) | Rick Helling | 118 | DUNWICH | Yorvit Torrealba | 142 | BOOTHBAY HRBR (DUN) | Adam Stern |
| 95 | EMERALD CITY | Scott Munter | 119 | DUNWICH (ECW) | William Bergolla | 143 | EMERALD CITY | Shigetoshi Hasegawa |
| 96 | WINTER HILL | Willy Aybar | 120 | WINTER HILL | Jermaine Van Buren | 144 | EMERALD CITY (WHG) | Jose Bautista |
| ROUND SEVEN | ROUND EIGHT | ROUND NINE | ||||||
| 145 | REDONDO | Damon Hollins | 169 | REDONDO | John Gall | 193 | REDONDO | Matt Diaz |
| 146 | BOOTHBAY HRBR (OCC) | Aquilino Lopez | 170 | ORANGE COUNTY | Shaun Marcum | 194 | DUNWICH (KCK) | Todd Coffey |
| 147 | BOSTON COLLEGE | Jeff Harris | 171 | BOSTON COLLEGE | Aaron Rakers | 195 | TALLAHASSEE | Geoff Blum |
| 148 | KING COUNTY | Macay McBride | 172 | KING COUNTY | Matt Capps | 196 | MOONLIGHT | Mark Hendrickson |
| 149 | TALLAHASSEE | Orlando Palmeiro | 173 | TALLAHASSEE | Chris Widger | 197 | MILFORD | Vance Wilson |
| 150 | MOONLIGHT | Mike Morse | 174 | MOONLIGHT | Doug Brocail | 198 | TACOMA | Mike DeJean |
| 151 | NEW YORK | Scott Hairston | 175 | BERLIN (NY) | John Rodriguez | 199 | BOOTHBAY HARBOR | Scott Feldman |
| 152 | MILFORD | John Wasdin | 176 | MILFORD (BHL) | Julio Santana | 200 | DENVER | Claudio Vargas |
| 153 | TACOMA | David Cortes | 177 | TACOMA | Jay Bergmann | 201 | PLAINFIELD | Pedro Astacio |
| 154 | BOOTHBAY HARBOR | Paul Phillips | 178 | MILFORD | Jason Ellison | 202 | SEATAC | Chris Resop |
| 155 | DENVER | Steve Kline | 179 | DENVER | Russ Springer | 203 | REDONDO (LYN) | Josh Hancock |
| 156 | CHARLOTTE (PLA) | Glenn Williams | 180 | PLAINFIELD | Pablo Ozuna | 204 | BUFFALO | Daryle Ward |
| 157 | SEATAC | Robert Fick | 181 | LYNNWOOD | J P Howell | 205 | UNION | Tanyon Sturtze |
| 158 | LYNNWOOD | John Foster | 182 | SEATAC | Franquelis Osoria | 206 | WACHUSETT | Darrell Rasner |
| 159 | BRISTOL | Chip Ambres | 183 | BRISTOL | Sun-Woo Kim | 207 | GRAND HAVEN | Luis Rodriguez |
| 160 | BUFFALO | Bernie Williams | 184 | BUFFALO | James Baldwin | 208 | BERLIN | Raul Chavez |
| 161 | UNION | Vic Darensbourg | 185 | UNION | Damian Easley | 209 | BUFFALO (DUN) | Terry Mulholland |
| 162 | WACHUSETT | Lenny DiNardo | 186 | GRAND HAVEN | Josh Bard | 210 | EMERALD CITY | Eddie Garabito |
| 163 | GRAND HAVEN | Chin-Hui Tsao | 187 | WACHUSETT | Steve Finley | 211 | WINTER HILL | Roberto Petagine |
| 164 | BERLIN | Rafael Palmeiro | 188 | BERLIN | Ricky Ledee | |||
| 165 | DUNWICH (CHA) | Dan Ortmeier | 189 | ORANGE CTY (CHA) | Andy Phillips | |||
| 166 | DUNWICH | Wandy Rodriguez | 190 | DUNWICH | Kevin Correia | |||
| 167 | EMERALD CITY | Matt Belisle | 191 | EMERALD CITY | Josh Phelps | |||
| 168 | WINTER HILL | Jason Botts | 192 | WINTER HILL | Juan Castro | |||
| ROUND TEN | ROUND ELEVEN | ROUND TWELVE | ||||||
| 212 | REDONDO | Gabe Gross | 228 | DUNWICH (RED) | Tony Blanco | 241 | UNION (RED) | Scott Proctor |
| 213 | KING COUNTY | Marcos Carvajal | 229 | KING COUNTY | Jonah Bayliss | 242 | KING COUNTY | Jake Woods |
| 214 | TALLAHASSEE | Sidney Ponson | 230 | TALLAHASSEE | Chad Bradford | 243 | MOONLIGHT | Tim Byrdak |
| 215 | MOONLIGHT | Carlos Baerga | 231 | MOONLIGHT | Joe McEwing | 244 | MILFORD (BHL) | Matt Persiho |
| 216 | BOOTHBAY HARBOR | Ron Flores | 232 | TACOMA | Scott Sauerbeck | 245 | TACOMA | Denny Hocking |
| 217 | TACOMA | Greg Dobbs | 233 | BOOTHBAY HARBOR | JJ Furmaniak | 246 | PLAINFIELD | Paul Bako |
| 218 | DUNWICH (DEN) | Jorge Julio | 234 | DENVER | Eric Young | 247 | BUFFALO | Geronimo Gil |
| 219 | PLAINFIELD | Joel Peralta | 235 | PLAINFIELD | Scott Williamson | 248 | WACHUSETT | Rick White |
| 220 | KING COUNTY (LYN) | Chris Denorfia | 236 | REDONDO (STS) | Jose Macias | 249 | BERLIN | Derek Thompson |
| 221 | SEATAC | Richard Hidalgo | 237 | BUFFALO | Brett Boone | 250 | EMERALD CITY | Brandon Watson |
| 222 | BUFFALO | D J Carrasco | 238 | WACHUSETT | Jason Dubois | |||
| 223 | GRAND HAVEN | Wil Ledezma | 239 | BERLIN | Jason Tyner | |||
| 224 | WACHUSETT | Marcus Thames | 240 | EMERALD CITY | Ramon Vazquez | |||
| 225 | BERLIN | Lenny Harris | ||||||
| 226 | EMERALD CITY | Wiki Gonzalez | ||||||
| 227 | WINTER HILL | Dan Wilson | ||||||
| ROUND THIRTEEN | ROUND FOURTEEN | ROUND FIFTEEN | ||||||
| 251 | REDONDO | Mike Edwards | 258 | KING COUNTY | Bobby Madritsch | 263 | PLAINFIELD | Scott Atchison |
| 252 | KING COUNTY | Esteban German | 259 | BOOTHBAY HARBOR | Brian Bullington | 264 | WACHUSETT | Brian Shouse |
| 253 | TACOMA | Andrew Good | 260 | TACOMA | Nelson Cruz | |||
| 254 | BOOTHBAY HARBOR | Kaz Tadano | 261 | PLAINFIELD | Ricky Bottalico | |||
| 255 | PLAINFIELD | Eli Marrero | 262 | CHARLOTTE (WAC) | Ramon Ortiz | |||
| 256 | WACHUSETT | Chad Harville | ||||||
| 257 | BERLIN | Bernie Castro | ||||||
| ROUND SIXTEEN | ROUND SEVENTEEN | |||||||
| 265 | PLAINFIELD | Chris Bootcheck | 267 | PLAINFIELD | Kane Davis | |||
| 266 | WACHUSETT | Alan Embree | ||||||