| 2016 CCBA DRAFT | ||||||||
| POS | ROUND ONE | SELECTION | POS | ROUND TWO | SELECTION | POS | ROUND THREE | SELECTION |
| 1 | Loxley (MIL) | Carlos Correia | 25 | Monroe | Jonathan Gray | 49 | Grand Rapids (MIL) | Gary Sanchez |
| 2 | Flatbush (MON) | Kris Bryant | 26 | Loxley (MIL) | Jung-Ho Kang | 50 | Monroe | Vincent Velazquez |
| 3 | Monroe (FLA) | Francisco Lindor | 27 | Lakeview | Yasmany Tomas | 51 | Loxley | Brandon Drury |
| 4 | Lakeview | Noah Syndergaard | 28 | Hilltop (LOX) | Devon Travis | 52 | Flatbush | Max Kepler |
| 5 | Loxley | Corey Seager | 29 | Flatbush | Ketel Marte | 53 | Lakeview | Johnny Giovatella |
| 6 | St Augustine | Miguel Sano | 30 | St Augustine | Raisel Iglesias | 54 | St Augustine | Frank Montas |
| 7 | Tacoma | Byron Buxton | 31 | Tacoma | Billy Burns | 55 | Tacoma | Carlos Perez |
| 8 | Wachusett | Carlos Rodon | 32 | Wachusett | Chris Colabello | 56 | Wachusett | Will Harris |
| 9 | Plainfield | Blake Swihart | 33 | Plainfield | Odubel Herrera | 57 | Plainfield | Trayce Thompson |
| 10 | Flatbush (BUF) | Kyle Schwarber | 34 | Buffalo | Chris Heston | 58 | Buffalo | Mark Canha |
| 11 | Texas | Lance McCullers | 35 | Texas | Trea Turner | 59 | Texas | Tyler Duffy |
| 12 | Grand Rapids | Addison Russell | 36 | Grand Rapids | Taylor Jungmann | 60 | Grand Rapids | Jacob Lindgren |
| 13 | Schweinfurt | Alex Rodriguez | 37 | Emerald City | Greg Bird | 61 | Emerald City (PSS) | Alex Gonzalez |
| 14 | Emerald City | Stephen Piscotty | 38 | New York (PSS) | Roberto Osuna | 62 | Fire Lake (SCH) | Jose Peraza |
| 15 | Monroe (PSS) | Joey Gallo | 39 | Fire Lake (SCH) | Eddie Rosario | 63 | Emerald City | Hector Olivera |
| 16 | Kenmore | Michael Conforto | 40 | Denver | Matt Wisler | 64 | Kenmore | Preston Tucker |
| 17 | Denver | Justin Bour | 41 | Grand Rapids (KEN) | Nathan Karns | 65 | Puget Sound (DEN) | Mark Lowe |
| 18 | Quinsigamond | Eduardo Rodriguez | 42 | Hilltop | Delino DeShields | 66 | Quinsigamond | Williams Perez |
| 19 | Hilltop | Steven Matz | 43 | Quinsigamond | Cody Anderson | 67 | Hilltop | Aaron Altherr |
| 20 | New York | Joe Ross | 44 | New York | Kevin Plawecki | 68 | New York | Henry Owens |
| 21 | Loxley (FLD) | Aaron Nola | 45 | Loxley (FLD) | Travis Shaw | 69 | Loxley (FLD) | Curt Casali |
| 22 | Flatbush (WOR) | Luis Severino | 46 | Worcester | Keone Kela | 70 | Worcester | Yimi Garcia |
| 23 | Texas (BHL) | Matt Duffy | 47 | Worcester (OCC) | Liam Hendricks | 71 | Boothbay | AJ Cole |
| 24 | Loxley (OCC) | Archie Bradley | 48 | Grand Rapids(BHL) | Raul Mondesi Jr. | 72 | Orange County | Jered Eickhoff |
| POS | ROUND FOUR | SELECTION | POS | ROUND FIVE | SELECTION | POS | ROUND SIX | SELECTION |
| 73 | Monroe | Brandon McCarthy | 97 | Milford | Andres Blanco | 121 | Monroe | Michael Reed |
| 74 | Milford | Mike Bolsinger | 98 | Monroe | Giovanni Urshella | 122 | Milford | Peter Bourjos |
| 75 | Flatbush | Jorge Lopez | 99 | Lakeview | Matt Albers | 123 | New York (LOX) | Hansel Robles |
| 76 | Lakeview | Paulo Orlando | 100 | St Augustine (LOX) | Joe Blanton | 124 | Flatbush | Sergio Romo |
| 77 | Loxley | Michael Lorenzen | 101 | Flatbush | Tim Cooney | 125 | Lakeview | Shane Peterson |
| 78 | St Augustine | Zach Davies | 102 | St Augustine | Richie Shaffer | 126 | St Augustine | Carlos Villanueva |
| 79 | Tacoma | Shawn Kelley | 103 | Tacoma | Pedro Ciriaco | 127 | Tacoma | Luis Garcia |
| 80 | Wachusett | Ryan Madson | 104 | Wachusett | Blane Boyer | 128 | Kenmore (WAC) | Josh Osich |
| 81 | Plainfield | Tommy Pham | 105 | Plainfield | Michael Blazek | 129 | Plainfield | Hernan Perez |
| 82 | Buffalo | Clint Robinson | 106 | Buffalo | Bartolo Colon | 130 | Buffalo | Franklin Morales |
| 83 | Texas | Jeff Manship | 107 | Texas | Jose Alvarez | 131 | Texas | Miguel Castro |
| 84 | Grand Rapids | Travis Jankowski | 108 | Grand Rapids | Felipe Rivero | 132 | Grand Rapids | AJ Ellis |
| 85 | Fire Lake (SCH) | Cesar Ramos | 109 | Puget Sound (ECW) | Kelby Tomlinson | 133 | Puget Sound | Jesus Sucre |
| 86 | Emerald City | Adonis Garcia | 110 | Puget Sound | Brett Wallace | 134 | Schweinfurt | Dalier Hinojosa |
| 87 | Puget Sound | Franklin Gutierrez | 111 | Fire Lake (SCH) | Mikie Mahtook | 135 | Emerald City | Jon Singleton |
| 88 | Denver | Dustin Ackley | 112 | Kenmore | Steve Clevenger | 136 | Denver | Ivan DeJesus |
| 89 | Kenmore | Tom Murphy | 113 | Denver | Archimedes Caminero | 137 | Kenmore | Aaron Hill |
| 90 | Hilltop | Brian Johnson | 114 | Quinsigamond | Adam Conley | 138 | Hilltop | Greg Holland |
| 91 | Quinsigamond | Tyler Saladino | 115 | Hilltop | Alex Meyer | 139 | Quinsigamond | Robbie Ross |
| 92 | New York | Austin Hedges | 116 | New York | Mychal Givens | 140 | New York | Socrates Brito |
| 93 | Fire Lake | Xavier Cedeno | 117 | Fire Lake | Rich Hill | 141 | Fire Lake | John Lamb |
| 94 | Worcester | Kyle Ryan | 118 | Worcester | Trevor Gott | 142 | Worcester | Elian Herrera |
| 95 | Flatbush (OCC) | Rob Refsnyder | 119 | Boothbay | Miguel Socolovich | 143 | Monroe (OCC) | Wilmer Difo |
| 96 | St Augustine (BHL) | Sean Gilmartin | 120 | Orange County | Jason Rogers | 144 | Boothbay | Tony Zych |
| POS | ROUND SEVEN | SELECTION | POS | ROUND EIGHT | SELECTION | POS | ROUND NINE | SELECTION |
| 145 | Milford | Jeff Francoeur | 167 | Fire Lake (MON) | Jarrett Parker | 189 | Milford | Adam Duvall |
| 146 | Monroe | Daniel Hudson | 168 | Milford | Kyle Blanks | 190 | Monroe | Sean Doolittle |
| 147 | Flatbush | Josh Fields | 169 | Lakeview | Darin Ruf | 191 | Flatbush | Carl Edwards |
| 148 | Lakeview | Micah Johnson | 170 | Flatbush | Michael Feliz | 192 | Lakeview | Rex Brothers |
| 149 | St Augustine | Austin Barnes | 171 | St Augustine | JP Arencibia | 193 | Wachusett | Eury Prerez |
| 150 | Tacoma | Fernando Rodriguez | 172 | Tacoma | Pete Kozma | 194 | Plainfield | Carlos Frias |
| 151 | Wachusett | Zach Godley | 173 | Puget Sound (WAC) | Manny Banuelos | 195 | Buffalo | Chris Gimenez |
| 152 | Plainfield | Clint Barmes | 174 | Plainfield | Mike Pelfrey | 196 | Grand Rapids | Ike Davis |
| 153 | Buffalo | Adam LaRoche | 175 | Buffalo | Omar Infante | 197 | Puget Sound | Greg Garcia |
| 154 | Texas | Silvino Bracho | 176 | Texas | Jairo Diaz | 198 | Schweinfurt | Joe Thatcher |
| 155 | Grand Rapids | Matt Andariese | 177 | Grand Rapids | Steve Geltz | 199 | Emerald City | Garrett Jones |
| 156 | Schweinfurt | Drew VerHagen | 178 | Emerald City | Juan Nicasio | 200 | Kenmore | Daniel Winkler |
| 157 | Emerald City | Justin Nicolino | 179 | Emerald City (PSS) | Elvis Araujo | 201 | Denver | Rob Scahill |
| 158 | Puget Sound | Edwin Jackson | 180 | Schweinfurt | Andrew Bellatti | 202 | New York | Kirk Nieuwenhuis |
| 159 | Kenmore | Christian Bergman | 181 | Denver | John Jay | 203 | Fire Lake | Rob Brantly |
| 160 | Denver | Matt Belisle | 182 | Kenmore | Adam Ottavino | 204 | Worcester | Chris Rusin |
| 161 | Quinsigamond | Vidal Nuno | 183 | Quinsigamond | John Danks | 205 | Boothbay | Yhonathan Barrios |
| 162 | New York | Mike Montgomery | 184 | New York | Shane Greene | 206 | Orange County | Charlie Furbush |
| 163 | Fire Lake | Chris Herrmann | 185 | Fire Lake | Shawn Armstrong | |||
| 164 | Worcester | Vance Worley | 186 | Worcester | David Phelps | |||
| 165 | Boothbay | Erik Goeddel | 187 | Orange County | Cristhian Adames | |||
| 166 | Worcester (OCC) | Cliff Pennington | 188 | Boothbay | Pedro Severino | |||
| POS | ROUND TEN | SELECTION | POS | ROUND ELEVEN | SELECTION | POS | ROUND TWELVE | SELECTION |
| 207 | Boothbay (MON) | Ryan Brett | 221 | Milford | Tyler Wilson | 232 | Orange County (MHB) | Todd Cunningham |
| 208 | Milford | Brian Holaday | 222 | Monroe | Oscar Hernandez | 233 | Lakeview | Michael McKenry |
| 209 | Buffalo (FLA) | Alexi Ogando | 223 | Lakeview | Alex Claudio | 234 | Fire Lake (WAC) | John Moscot |
| 210 | Lakeview | Dixon Machado | 224 | Wachusett | Pedro Villarreal | 235 | Plainfield | Sandy Leon |
| 211 | Boothbay (WAC) | Ronald Torryes | 225 | Plainfield | Andrew Faulkner | 236 | Buffalo | Casey Sadler |
| 212 | Boothbay (PLA) | Bryan Mitchell | 226 | Buffalo | Justin Masterson | 237 | Puget Sound | Logan Verett |
| 213 | Buffalo | John Axford | 227 | Emerald City | Nate Jones | 238 | Schweinfurt | Brandon Pinder |
| 214 | Grand Rapids | Scott Schebler | 228 | Puget Sound | Enny Romero | 239 | Emerald City | Jonathan Herrera |
| 215 | Schweinfurt | Kyle Barraclough | 229 | Schweinfurt | Nick Vincent | 240 | Kenmore | Rocky Gale |
| 216 | Emerald City | Josh Rutledge | 230 | Kenmore | Keyvius Sampson | 241 | Worcester | Kevin Quackenbush |
| 217 | Puget Sound | Mike Wright | 231 | Worcester | Adam Morgan | |||
| 218 | Kenmore | Taylor Featherston | ||||||
| 219 | Worcester | Jake Elmore | ||||||
| 220 | Boothbay | Kendry Flores | ||||||
| POS | ROUND THIRTEEN | SELECTION | POS | ROUND FOURTEEN | SELECTION | POS | ROUND FIFTEEN | SELECTION |
| 242 | Monroe | Kyle Kubitza | 251 | Flatbush (MON) | Miguel Almonte | 260 | Lakeview | Jerry Sands |
| 243 | Lakeview | Cheslor Cuthbert | 252 | Lakeview | Wesley Wright | 261 | Wachusett | Michael Tonkin |
| 244 | Wachusett | Enrique Burgos | 253 | Wachusett | Jhoulys Chacin | 262 | Plainfield | Bruce Rondon |
| 245 | Plainfield | Zach Lee | 254 | Plainfield | Cam Bedrosian | 263 | Buffalo | Frank Garces |
| 246 | Buffalo | Sean Nolin | 255 | Buffalo | Tyler Cravy | 264 | Monroe (PSS) | danny Farquhar |
| 247 | Schweinfurt | Jason Vargas | 256 | Puget Sound | L J Hoes | 265 | Schweinfurt | Brian Ellington |
| 248 | Puget Sound | Kaleb Cowart | 257 | Schweinfurt | Ryan Tepera | 266 | Worcester | Stephen Wright |
| 249 | Kenmore | Joey Butler | 258 | Kenmore | Ken Roberts | |||
| 250 | Worcester | Ehire Adrianza | 259 | Worcester | Ezequiel Carrera | |||
| POS | ROUND SIXTEEN | SELECTION | POS | ROUND SEVENTEEN | SELECTION | |||
| 267 | Lakeview | Johnathon Broxton | 271 | Lakeview | Jason Motte | |||
| 268 | Buffalo | David deJesus | 272 | Buffalo | Chris Taylor | |||
| 269 | Schweinfurt | Wandy Rodriguez | ||||||
| 270 | Milford (WOR) | Bud Norris | ||||||